miRBase entry: cli-mir-181b-1

Stem-loop cli-mir-181b-1


Accession
MI0029991
Description
Columba livia cli-mir-181b-1 precursor miRNA


Sequence

aaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUuaacuauguggacaagCUCACUGAACAAUGAAUGCAAcuguggcccca
...(((((((.....(((((((((...(((((((((((..((....))..))))))))))).)))))))))....)))))))...

Structure
aaa       aucAA         CUG           aa  a 
   ggucaca     CAUUCAUUG   UCGGUGGGUUu  cu u
   |||||||     |||||||||   |||||||||||  ||  
   ccggugu     GUAAGUAAC   AGUCACUCgaa  gg g
acc       -cAAC         --A           ca  u 


Annotation confidence Not enough data
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Genome context
KB375307.1: 7344927-7345011 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-181b-5p

Accession MIMAT0038553
Description Columba livia cli-miR-181b-5p mature miRNA
Sequence 14 - AACAUUCAUUGCUGUCGGUGGGUU - 37
Evidence experimental
Illumina [1]

Mature cli-miR-181b-3p

Accession MIMAT0038554
Description Columba livia cli-miR-181b-3p mature miRNA
Sequence 54 - CUCACUGAACAAUGAAUGCAA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196