miRBase entry: cli-mir-200b

Stem-loop cli-mir-200b


Accession
MI0030006
Description
Columba livia cli-mir-200b precursor miRNA


Sequence

ccugagaugccauuacCAUCUUACUGGGCAGCAUUGGAuguuuucugucuuucUAAUACUGCCUGGUAAUGAUGAUuaugguguuucgug
..(((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...)))))))))))..

Structure
cc           uac    -           C      uguuu 
  ugagaugccau   CAUC UUACUGGGCAG AUUGGA     u
  |||||||||||   |||| ||||||||||| ||||||     c
  gcuuuguggua   GUAG AAUGGUCCGUC UAAUcu     u
gu           uUA    U           A      uucug 


Annotation confidence Not enough data
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Genome context
KB376210.1: 2377070-2377159 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cli-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-200b-5p

Accession MIMAT0038577
Description Columba livia cli-miR-200b-5p mature miRNA
Sequence 17 - CAUCUUACUGGGCAGCAUUGGA - 38
Evidence experimental
Illumina [1]

Mature cli-miR-200b-3p

Accession MIMAT0038578
Description Columba livia cli-miR-200b-3p mature miRNA
Sequence 54 - UAAUACUGCCUGGUAAUGAUGAU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196