miRBase entry: cli-mir-217

Stem-loop cli-mir-217

Accession

MI0030019

Description

Columba livia cli-mir-217 precursor miRNA

Sequence

uuugaugucgcagAUACUGCAUCAGGAACUGAUUGgauaauaaucagucaccAUCAGUUCCUAAUGCAUUGCCUucagcaucuaa
...(((((.(.((.((.(((((.((((((((((.((((........))).).)))))))))).))))).)).)).).)))))...

Structure

uuu     c c  A  C     C          U -   aau 
   gaugu g ag UA UGCAU AGGAACUGAU G gau   a
   ||||| | || || ||||| |||||||||| | |||    
   cuacg c UC GU ACGUA UCCUUGACUA c cug   a
aau     a u  C  U     A          c a   acu

Annotation confidence Not enough data

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Genome context

KB375999.1: 133563-133647 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-mir-217

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-217-5p

Accession	MIMAT0038600
Description	Columba livia cli-miR-217-5p mature miRNA
Sequence	14 - AUACUGCAUCAGGAACUGAUUG - 35
Evidence	experimental Illumina [1]

Mature cli-miR-217-3p

Accession	MIMAT0038601
Description	Columba livia cli-miR-217-3p mature miRNA
Sequence	53 - AUCAGUUCCUAAUGCAUUGCCU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196