miRBase entry: cli-mir-338b

Stem-loop cli-mir-338b


Accession
MI0030033
Description
Columba livia cli-mir-338b precursor miRNA


Sequence

acugcugcuccuccugcccAACAAUAUCCUGGUGCUGAGUGaguugcagacagagacUCCAGCAUCAGUGAUUUUGUUGAggagggggugcacugccauc
...(((((.((((((.((((((((.((((((((((((...(((((.(.....).)))))))))))))).))).)))))).)))))))).)))..))....

Structure
-acu  --   u      g  -      U   -         AGU     g a 
    gc  ugc ccuccu cc cAACAA AUC CUGGUGCUG   Gaguu c g
    ||  ||| |||||| || |||||| ||| |||||||||   ||||| | a
    cg  acg ggggga gg GUUGUU UAG GACUACGAC   CUcag g c
cuac  uc   u      -  A      U   U         ---     a a 


Annotation confidence Not enough data
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Genome context
KB375601.1: 79313-79412 [+]

Database links

Mature cli-miR-338b-5p

Accession MIMAT0038620
Description Columba livia cli-miR-338b-5p mature miRNA
Sequence 20 - AACAAUAUCCUGGUGCUGAGUG - 41
Evidence experimental
Illumina [1]

Mature cli-miR-338b-3p

Accession MIMAT0038621
Description Columba livia cli-miR-338b-3p mature miRNA
Sequence 58 - UCCAGCAUCAGUGAUUUUGUUGA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196