miRBase entry: cli-mir-425

Stem-loop cli-mir-425


Accession
MI0030040
Description
Columba livia cli-mir-425 precursor miRNA


Sequence

gagagacggcuuuggAAUGACACGAUCACUCCCGCUGAGcgggcagccugaggcCAUCGGGGAUGUCGUGUCUGUCCaaagcucuuucggu
((((((..((((((((..(((((((.((.(((((.((.(((((...)))...)))).))))).)))))))))..))))))))))))))...

Structure
---      cg        AU       U  C     C  A  ---   c 
   gagaga  gcuuuggA  GACACGA CA UCCCG UG Gc   ggg  
   ||||||  ||||||||  ||||||| || ||||| || ||   ||| a
   cuuucu  cgaaaCCU  CUGUGCU GU GGGGC AC cg   ucc  
ugg      --        GU       -  A     U  -  gag   g 


Annotation confidence Not enough data
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Genome context
KB375561.1: 2757261-2757351 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-425-5p

Accession MIMAT0038632
Description Columba livia cli-miR-425-5p mature miRNA
Sequence 16 - AAUGACACGAUCACUCCCGCUGAG - 39
Evidence experimental
Illumina [1]

Mature cli-miR-425-3p

Accession MIMAT0038633
Description Columba livia cli-miR-425-3p mature miRNA
Sequence 55 - CAUCGGGGAUGUCGUGUCUGUCC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196