miRBase entry: cli-mir-449b

Stem-loop cli-mir-449b

Accession

MI0030043

Description

Columba livia cli-mir-449b precursor miRNA

Sequence

cugugucugguAGGCAGUGUACUGCUAGCUGGCUGCcguaucuggauggagcAGUCACUCCUGCACUGCCACCugcugcagggcugg
(((((.(.(((.(((((((((.....((.(((((((..(((....)))..)))))))))..)))))))))))).).)))))......

Structure

------     u u   A         CUGCU  C       cg   c 
      cugug c ggu GGCAGUGUA     AG UGGCUGC  uau u
      ||||| | ||| |||||||||     || |||||||  |||  
      gacgu g CCA CCGUCACGU     UC ACUGAcg  gua g
ggucgg     c u   -         ---CC  -       ag   g

Annotation confidence Not enough data

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Genome context

KB375359.1: 2803297-2803383 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cli-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-449b-5p

Accession	MIMAT0038637
Description	Columba livia cli-miR-449b-5p mature miRNA
Sequence	12 - AGGCAGUGUACUGCUAGCUGGCUGC - 36
Evidence	experimental Illumina [1]

Mature cli-miR-449b-3p

Accession	MIMAT0038638
Description	Columba livia cli-miR-449b-3p mature miRNA
Sequence	53 - AGUCACUCCUGCACUGCCACC - 73
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196