miRBase entry: cli-mir-1306

Stem-loop cli-mir-1306


Accession
MI0030062
Description
Columba livia cli-mir-1306 precursor miRNA


Sequence

cagccuccaCCACCUCCCCUGCAAACGUCCagugacgcagagguaauggACGUUGGCUCUGGUGGUGAUGgacag
...((..(((((((......((.((((((((...((......))..)))))))).))...)))))))..))....

Structure
-cag  uc       UCCCCU  A        gug  gc 
    cc  caCCACC      GC AACGUCCa   ac  a
    ||  |||||||      || ||||||||   ||   
    gG  GUGGUGG      CG UUGCAggu   ug  g
gaca  UA       ---UCU  G        -aa  ga 


Annotation confidence Not enough data
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Genome context
KB375297.1: 625480-625554 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-1306
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-1306-5p

Accession MIMAT0038670
Description Columba livia cli-miR-1306-5p mature miRNA
Sequence 10 - CCACCUCCCCUGCAAACGUCC - 30
Evidence experimental
Illumina [1]

Mature cli-miR-1306-3p

Accession MIMAT0038671
Description Columba livia cli-miR-1306-3p mature miRNA
Sequence 50 - ACGUUGGCUCUGGUGGUGAUG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196