miRBase entry: cli-mir-1788

Stem-loop cli-mir-1788


Accession
MI0030080
Description
Columba livia cli-mir-1788 precursor miRNA


Sequence

cugucuccggGGCUUGUUUUCCGUUGCCUGCGguuuguuccagugacuCAGGCAGCGAAAGCAAGUCUGggaggcug
..((((((.((((((((((((.((((((((.((((.........)))))))))))))))))))))))).))))))..

Structure
cu      g            C        C    ugu 
  gucucc gGGCUUGUUUUC GUUGCCUG Gguu   u
  |||||| |||||||||||| |||||||| ||||   c
  cggagg UCUGAACGAAAG CGACGGAC ucag   c
gu      G            -        -    uga 


Annotation confidence Not enough data
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Genome context
KB375305.1: 1391510-1391586 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-1788
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-1788-5p

Accession MIMAT0038700
Description Columba livia cli-miR-1788-5p mature miRNA
Sequence 11 - GGCUUGUUUUCCGUUGCCUGCG - 32
Evidence experimental
Illumina [1]

Mature cli-miR-1788-3p

Accession MIMAT0038701
Description Columba livia cli-miR-1788-3p mature miRNA
Sequence 49 - CAGGCAGCGAAAGCAAGUCUG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196