miRBase entry: pbv-let-7e

Stem-loop pbv-let-7e


Accession
MI0030138
Description
Python bivittatus pbv-let-7e precursor miRNA


Sequence

augcuguccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggagccaucuucucccuuugagcuaaCUAUACAAUCUACUGUCUUUCCua
............(((..((((((((((((((.((((((((((((.......))))......)).)))))).)))))))))))))).))).

Structure
augcuguccuug   cU              A      -  ------    cc 
            agg  GAGGUAGUAGAUUG AUAGUU gu      ggag  a
            |||  |||||||||||||| |||||| ||      ||||  u
            uCC  UUCUGUCAUCUAAC UAUCaa cg      ccuc  c
-----------a   -U              A      u  aguuuc    uu 


Annotation confidence Not enough data
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Genome context
KE953223.1: 218864-218953 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-let-7e-5p

Accession MIMAT0038803
Description Python bivittatus pbv-let-7e-5p mature miRNA
Sequence 17 - UGAGGUAGUAGAUUGAAUAGUU - 38
Evidence experimental
Illumina [1]

Mature pbv-let-7e-3p

Accession MIMAT0038804
Description Python bivittatus pbv-let-7e-3p mature miRNA
Sequence 67 - CUAUACAAUCUACUGUCUUUCC - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196