miRBase entry: pbv-mir-1a-2

Stem-loop pbv-mir-1a-2


Accession
MI0030144
Description
Python bivittatus pbv-mir-1a-2 precursor miRNA


Sequence

accugcccagagcACAUACUUCUUUAUGUACCCAUaugaagauauaauguuaUGGAAUGUAAAGAAGUAUGUAcuuuuggcagg
.((((((.((((.((((((((((((((((..(((((..............))))).)))))))))))))))).)))).))))))

Structure
a      c    c                AC     ugaaga 
 ccugcc agag ACAUACUUCUUUAUGU  CCAUa      u
 |||||| |||| ||||||||||||||||  |||||       
 ggacgg uuuc UGUAUGAAGAAAUGUA  GGUau      a
-      u    A                -A     uguaau 


Annotation confidence Not enough data
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Genome context
KE953557.1: 24092-24175 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-1a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-1a-3p

Accession MIMAT0038813
Description Python bivittatus pbv-miR-1a-3p mature miRNA
Sequence 53 - UGGAAUGUAAAGAAGUAUGUA - 73
Evidence experimental
Illumina [1]

Mature pbv-miR-1a-2-5p

Accession MIMAT0038814
Description Python bivittatus pbv-miR-1a-2-5p mature miRNA
Sequence 14 - ACAUACUUCUUUAUGUACCCAU - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196