miRBase entry: pbv-mir-7-1

Stem-loop pbv-mir-7-1


Accession
MI0030146
Description
Python bivittatus pbv-mir-7-1 precursor miRNA


Sequence

uuggucuaguucugugUGGAAGACUAGUGAUUUUGUUGUUuuuagauuacuaaagugaCAACAAAUCGCAGUCUACCAUAuggcacagucca
.(((.((.((.((((((((.(((((.(((((((.(((((((((((....)))))..)))))))))))))))))).)))))))).)))).)))

Structure
u   u  a  u        A     A       U      --     a 
 ugg cu gu cugugUGG AGACU GUGAUUU GUUGUU  uuuag u
 ||| || || |||||||| ||||| ||||||| ||||||  |||||  
 acc ga ca gguAUACC UCUGA CGCUAAA CAACag  aaauc u
-   u  -  c        A     -       -      ug     a 


Annotation confidence Not enough data
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Genome context
KE954800.1: 58544-58635 [-]

Database links

Mature pbv-miR-7-5p

Accession MIMAT0038817
Description Python bivittatus pbv-miR-7-5p mature miRNA
Sequence 17 - UGGAAGACUAGUGAUUUUGUUGUU - 40
Evidence experimental
Illumina [1]

Mature pbv-miR-7-3p

Accession MIMAT0038818
Description Python bivittatus pbv-miR-7-3p mature miRNA
Sequence 59 - CAACAAAUCGCAGUCUACCAUA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196