miRBase entry: pbv-mir-16c

Stem-loop pbv-mir-16c


Accession
MI0030160
Description
Python bivittatus pbv-mir-16c precursor miRNA


Sequence

ugucugcucugcuuUAGCAGCACGUAAAUACUGGAGuuuagaugcucugcccuCCAGUAUUGCUUUGCUGCUUUAgucaagcuggcacaugc
((((.(((..(((..(((((((....((((((((((..((((...))))..))))))))))....)))))))..)))..))).)))).....

Structure
-----    u   cu   uU       CGUA          uu    u 
     uguc gcu  gcu  AGCAGCA    AAUACUGGAG  uaga  
     |||| |||  |||  |||||||    ||||||||||  |||| g
     acgg cga  ugA  UCGUCGU    UUAUGACCuc  gucu  
cguac    u   ac   UU       UUCG          cc    c 


Annotation confidence Not enough data
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Genome context
KE958055.1: 56666-56757 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-16c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-16c-5p

Accession MIMAT0038836
Description Python bivittatus pbv-miR-16c-5p mature miRNA
Sequence 15 - UAGCAGCACGUAAAUACUGGAG - 36
Evidence experimental
Illumina [1]

Mature pbv-miR-16c-3p

Accession MIMAT0038837
Description Python bivittatus pbv-miR-16c-3p mature miRNA
Sequence 54 - CCAGUAUUGCUUUGCUGCUUUA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196