miRBase entry: pbv-mir-23a

Stem-loop pbv-mir-23a

Accession

MI0030170

Description

Python bivittatus pbv-mir-23a precursor miRNA

Sequence

gcugccugcugggguuccuggugaugugauuuuacccugauguucagaAUCACAUUGCCAGGGAUUUCCaac
((.....))((((((((((((((((((((((.....((((...))))))))))))))))))))).)))))..

Structure

gcugccugc     -                 uuacc    u 
         ugggg uuccuggugaugugauu     cuga  
         ||||| |||||||||||||||||     |||| g
         aCCUU AGGGACCGUUACACUAa     gacu  
-------ca     U                 -----    u

Annotation confidence Not enough data

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Genome context

KE953590.1: 100351-100422 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-23a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-23a-3p

Accession	MIMAT0038853
Description	Python bivittatus pbv-miR-23a-3p mature miRNA
Sequence	49 - AUCACAUUGCCAGGGAUUUCC - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196