miRBase entry: pbv-mir-24-1

Stem-loop pbv-mir-24-1


Accession
MI0030172
Description
Python bivittatus pbv-mir-24-1 precursor miRNA


Sequence

gauggacccguccuccggUGCCUACUGAGCUGAUAUCAGuucugauuuuacauacUGGCUCAGUUCAGCAGGAACAGgag
((((....))))((((.((.(((.(((((((((..(((((..((......)).))))).))))))))).))).)).))))

Structure
gauggacccguc    g  G   A         UA     uc  au 
            cucc gU CCU CUGAGCUGA  UCAGu  ug  u
            |||| || ||| |||||||||  |||||  ||   
            gagG CA GGA GACUUGACU  GGUca  ac  u
------------    A  A   C         -C     -u  au 


Annotation confidence Not enough data
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Genome context
KE954626.1: 205419-205498 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from pbv-mir-24-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-24-5p

Accession MIMAT0038856
Description Python bivittatus pbv-miR-24-5p mature miRNA
Sequence 19 - UGCCUACUGAGCUGAUAUCAG - 39
Evidence experimental
Illumina [1]

Mature pbv-miR-24-3p

Accession MIMAT0038857
Description Python bivittatus pbv-miR-24-3p mature miRNA
Sequence 56 - UGGCUCAGUUCAGCAGGAACAG - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196