miRBase entry: pbv-mir-30b

Stem-loop pbv-mir-30b

Accession

MI0030184

Description

Python bivittatus pbv-mir-30b precursor miRNA

Sequence

acugauucuuaguuuaUGUAAACAUCCUACACUCAGCUuuaucacaugaaauggcugggagauggaaguuuacuucaacugauuugg
........((((((...((((((.(((....(((((((...((....))...)))))))....))).))))))...)))))).....

Structure

acugauuc      uaU      A   UACA       uua  a 
        uuaguu   GUAAAC UCC    CUCAGCU   uc c
        ||||||   |||||| |||    |||||||   ||  
        agucaa   cauuug agg    gggucgg   ag a
---gguuu      cuu      a   uaga       uaa  u

Annotation confidence Not enough data

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Genome context

KE956868.1: 127448-127534 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-30b-5p

Accession	MIMAT0038872
Description	Python bivittatus pbv-miR-30b-5p mature miRNA
Sequence	17 - UGUAAACAUCCUACACUCAGCU - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196