miRBase entry: pbv-mir-30c-2

Stem-loop pbv-mir-30c-2


Accession
MI0030186
Description
Python bivittatus pbv-mir-30c-2 precursor miRNA


Sequence

UGUAAACAUCCUACACUCUCAGCUgugacuuugugguggCUGGGAGAAGGUUGUUUACGCCuccu
.(((((((.(((...(((((((((((.((...)).))))))))))).))).))))))).......

Structure
------U       U   ACA           g  u 
       GUAAACA CCU   CUCUCAGCUgu ac  
       ||||||| |||   ||||||||||| || u
       CAUUUGU GGA   GAGGGUCggug ug  
uccuCCG       U   --A           g  u 


Annotation confidence Not enough data
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Genome context
KE952992.1: 287017-287081 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-30c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-30c-5p

Accession MIMAT0038873
Description Python bivittatus pbv-miR-30c-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCAGCU - 24
Evidence experimental
Illumina [1]

Mature pbv-miR-30c-2-3p

Accession MIMAT0038875
Description Python bivittatus pbv-miR-30c-2-3p mature miRNA
Sequence 40 - CUGGGAGAAGGUUGUUUACGCC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196