miRBase entry: pbv-mir-30d

Stem-loop pbv-mir-30d

Accession

MI0030187

Description

Python bivittatus pbv-mir-30d precursor miRNA

Sequence

guagucuguuguUGUAAACAUCCCCGACUGGAAGCUggaaaauguagcUUUCAGUCCGAUGUUUGCUGCCgccggcuauuca
((((((.((.((.(((((((((...((((((((((((.......)))))))))))).))))))))).)).)).))))))...

Structure

---      u  u  U         CCC            ga 
   guaguc gu gu GUAAACAUC   GACUGGAAGCUg  a
   |||||| || || |||||||||   ||||||||||||  a
   uaucgg cg CG CGUUUGUAG   CUGACUUUcgau  a
acu      c  C  U         --C            gu

Annotation confidence Not enough data

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Genome context

KE956868.1: 129068-129149 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-30d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-30d-5p

Accession	MIMAT0038876
Description	Python bivittatus pbv-miR-30d-5p mature miRNA
Sequence	13 - UGUAAACAUCCCCGACUGGAAGCU - 36
Evidence	experimental Illumina [1]

Mature pbv-miR-30d-3p

Accession	MIMAT0038877
Description	Python bivittatus pbv-miR-30d-3p mature miRNA
Sequence	49 - UUUCAGUCCGAUGUUUGCUGCC - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196