miRBase entry: pbv-mir-99a

Stem-loop pbv-mir-99a


Accession
MI0030201
Description
Python bivittatus pbv-mir-99a precursor miRNA


Sequence

gugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGGugaaauauagugcaCAAGCUCGUUUCUAUGGGUCAGugucagucuggug
..((((((((((((..(((((((((..(((.((((((.............)))))).)))..)))))))))..)))))))).)))).

Structure
gu    -        aA         UC   U      Gugaa 
  gcca auuggcau  ACCCGUAGA  CGA CUUGUG     a
  |||| ||||||||  |||||||||  ||| ||||||     u
  uggu ugacuguG  UGGGUAUCU  GCU GAACac     a
-g    c        AC         UU   C      gugau 


Annotation confidence Not enough data
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Genome context
KE953041.1: 91437-91523 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pbv-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pbv-miR-99a-5p

Accession MIMAT0038895
Description Python bivittatus pbv-miR-99a-5p mature miRNA
Sequence 16 - AACCCGUAGAUCCGAUCUUGUGG - 38
Evidence experimental
Illumina [1]

Mature pbv-miR-99a-3p

Accession MIMAT0038896
Description Python bivittatus pbv-miR-99a-3p mature miRNA
Sequence 53 - CAAGCUCGUUUCUAUGGGUCAG - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196