miRBase entry: pbv-mir-100

Stem-loop pbv-mir-100


Accession
MI0030203
Description
Python bivittatus pbv-mir-100 precursor miRNA


Sequence

ugccaguugccacaAACCCGUAGAUCCGAACUUGUGcuccuauccuacaCAAGCUUGUAUCUAUAGGUAUGugucugcuuggcc
.((((((.(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).).)).)))).

Structure
u    -  u c    A   C      C   A      cucc 
 gcca gu g caca ACC GUAGAU CGA CUUGUG    u
 |||| || | |||| ||| |||||| ||| ||||||    a
 cggu cg c guGU UGG UAUCUA GUU GAACac    u
c    u  u u    A   A      U   C      aucc 


Annotation confidence Not enough data
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Genome context
KE964379.1: 2496-2579 [+]

Database links

Mature pbv-miR-100-5p

Accession MIMAT0038899
Description Python bivittatus pbv-miR-100-5p mature miRNA
Sequence 15 - AACCCGUAGAUCCGAACUUGUG - 36
Evidence experimental
Illumina [1]

Mature pbv-miR-100-3p

Accession MIMAT0038900
Description Python bivittatus pbv-miR-100-3p mature miRNA
Sequence 50 - CAAGCUUGUAUCUAUAGGUAUG - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196