miRBase entry: pbv-mir-181a-1

Stem-loop pbv-mir-181a-1

Accession

MI0030255

Description

Python bivittatus pbv-mir-181a-1 precursor miRNA

Sequence

cugacaaaaguucucagggAACAUUCAACGCUGUCGGUGAGUUUugucagugggauuaaACCAUCGACUGUUGAGUGUACCcugcggccuuugc
......((((.((.(((((.((((((((((..(((((((.((((.(((.....))).))))))))))))))))))))).))))).)).))))..

Structure

cugaca    u  u     A          CU       A    u   a 
      aaag uc caggg ACAUUCAACG  GUCGGUG GUUU guc g
      |||| || ||||| ||||||||||  ||||||| |||| ||| u
      uuuc gg gucCC UGUGAGUUGU  CAGCUAC CAaa uag g
----cg    c  c     A          --       -    u   g

Annotation confidence Not enough data

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Genome context

KE953590.1: 288453-288546 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-181a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-181a-5p

Accession	MIMAT0038975
Description	Python bivittatus pbv-miR-181a-5p mature miRNA
Sequence	20 - AACAUUCAACGCUGUCGGUGAGUUU - 44
Evidence	experimental Illumina [1]

Mature pbv-miR-181a-3p

Accession	MIMAT0038976
Description	Python bivittatus pbv-miR-181a-3p mature miRNA
Sequence	60 - ACCAUCGACUGUUGAGUGUACC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196