miRBase entry: pbv-mir-196c

Stem-loop pbv-mir-196c


Accession
MI0030270
Description
Python bivittatus pbv-mir-196c precursor miRNA


Sequence

uggucggugauuUAGGUAGUUUCUCGUUGUUGAGgcugaacauuucucucucugcagcacgaaacugccuucaucacuucaguuu
.....((((((..((((((((((..(((((.((((..(((...)))..)))).)))))..))))))))))..)))))).......

Structure
--ugguc      uU          UC     U    cu   c 
       ggugau  AGGUAGUUUC  GUUGU GAGg  gaa  
       ||||||  ||||||||||  ||||| ||||  ||| a
       ucacua  uccgucaaag  cgacg cucu  cuu  
uuugacu      cu          ca     u    cu   u 


Annotation confidence Not enough data
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Genome context
KE953980.1: 281956-282040 [+]

Database links

Mature pbv-miR-196c-5p

Accession MIMAT0038995
Description Python bivittatus pbv-miR-196c-5p mature miRNA
Sequence 13 - UAGGUAGUUUCUCGUUGUUGAG - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196