Stem-loop pbv-mir-200a

Accession

MI0030274

Description

Python bivittatus pbv-mir-200a precursor miRNA

Sequence

gugguccucuguggaCAUCUUACUAGACAGUGCUGGAuuuugucacuguacucUAACACUGUCUGGUAACGAUGUUuaaagagcgagcca
.(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)))

Structure

g   -  -    g        -             C    uuuugu 
 ugg uc cucu uggaCAUC UUACUAGACAGUG UGGA      c
 ||| || |||| |||||||| ||||||||||||| ||||       
 acc ag gaga auUUGUAG AAUGGUCUGUCAC AUcu      a
-   g  c    a        C             A    cauguc 

Annotation confidence Not enough data

Genome context

KE953648.1: 228225-228314 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-200a

Mature pbv-miR-200a-5p

• Accession: MIMAT0038999
• Description: Python bivittatus pbv-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACUAGACAGUGCUGGA - 37
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-200a-3p

• Accession: MIMAT0039000
• Description: Python bivittatus pbv-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGUU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196