miRBase entry: pbv-mir-216a

Stem-loop pbv-mir-216a

Accession

MI0030289

Description

Python bivittatus pbv-mir-216a precursor miRNA

Sequence

ggcugugaauugguuUAAUCUCAGCUGGCAACUGUGAgcaguuaauaaauucucuCACAGUGGUAUCUGGGAUUAUGcuaaacgcagcaau
.((((((..(((((.(((((((((.((.((.(((((((.((..........))))))))))).)).))))))))).))))).))))))...

Structure

--g      aa     u         C  G  A       c  uuaa 
   gcugug  uuggu UAAUCUCAG UG CA CUGUGAg ag    u
   ||||||  ||||| ||||||||| || || ||||||| ||     
   cgacgc  aaucG AUUAGGGUC AU GU GACACuc uc    a
uaa      -a     U         U  G  -       -  uuaa

Annotation confidence Not enough data

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Genome context

KE953947.1: 195072-195162 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-216a-5p

Accession	MIMAT0039022
Description	Python bivittatus pbv-miR-216a-5p mature miRNA
Sequence	16 - UAAUCUCAGCUGGCAACUGUGA - 37
Evidence	experimental Illumina [1]

Mature pbv-miR-216a-3p

Accession	MIMAT0039023
Description	Python bivittatus pbv-miR-216a-3p mature miRNA
Sequence	56 - CACAGUGGUAUCUGGGAUUAUG - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196