Stem-loop pbv-mir-338

Accession

MI0030302

Description

Python bivittatus pbv-mir-338 precursor miRNA

Sequence

uguuccuccccgucAACAAUAUCCUGGUGCUGAGUGAGUggcacucagagacUCCAGCAUCAGUGAUUUUGUUGAagagggggugcu
.((.(((((.(.(((((((.(((((((((((((((((((...))))....))).))))))))).))).))))))).).))))).)).

Structure

u  u     c g       U   -         -   ----    g 
 gu ccucc c ucAACAA AUC CUGGUGCUG AGU    GAGU  
 || ||||| | ||||||| ||| ||||||||| |||    |||| g
 cg ggggg g AGUUGUU UAG GACUACGAC Uca    cuca  
u  u     a a       U   U         C   gaga    c 

Annotation confidence Not enough data

Genome context

KE952972.1: 1130988-1131074 [+]

Mature pbv-miR-338-5p

• Accession: MIMAT0039041
• Description: Python bivittatus pbv-miR-338-5p mature miRNA
• Sequence: 15 - AACAAUAUCCUGGUGCUGAGUGAGU - 39
• Evidence: experimental ; Illumina [1]

Mature pbv-miR-338-3p

• Accession: MIMAT0039042
• Description: Python bivittatus pbv-miR-338-3p mature miRNA
• Sequence: 53 - UCCAGCAUCAGUGAUUUUGUUGA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196