miRBase entry: pbv-mir-449b

Stem-loop pbv-mir-449b

Accession

MI0030311

Description

Python bivittatus pbv-mir-449b precursor miRNA

Sequence

aaccugugacugauAGGCAGUGUAGAAUUAGCUGGCUgcuuuguuuaauucuagCAGUCGCUACCACACUGCUAUCUgcugcaggaacucu
..((((((.(.(((((.((((((.(...((((.(((((((............))))))))))).)))))))))))).).))))))......

Structure

----aa      a u     G      A AAU    U       uuguu 
      ccugug c gauAG CAGUGU G   UAGC GGCUgcu     u
      |||||| | ||||| |||||| |   |||| |||||||      
      ggacgu g CUAUC GUCACA C   AUCG CUGACga     a
ucucaa      c U     -      - --C    -       ucuua

Annotation confidence Not enough data

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Genome context

KE953060.1: 285998-286088 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pbv-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-449b-5p

Accession	MIMAT0039052
Description	Python bivittatus pbv-miR-449b-5p mature miRNA
Sequence	15 - AGGCAGUGUAGAAUUAGCUGGCU - 37
Evidence	experimental Illumina [1]

Mature pbv-miR-449b-3p

Accession	MIMAT0039053
Description	Python bivittatus pbv-miR-449b-3p mature miRNA
Sequence	55 - CAGUCGCUACCACACUGCUAUCU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196