miRBase entry: pbv-mir-449d

Stem-loop pbv-mir-449d

Accession

MI0030313

Description

Python bivittatus pbv-mir-449d precursor miRNA

Sequence

ugugugugaugguuUGGCAGUGUACUUCUUAGUUAGcuguuguacauauuccagcaacuaaauacacuuccauauuauugcaca
..(((((((((((.(((.((((((....((((((.((((............)))))))))).)))))).))).)))))))))))

Structure

ug           u   C      CUUC      A    uugua 
  ugugugauggu UGG AGUGUA    UUAGUU Gcug     c
  ||||||||||| ||| ||||||    |||||| ||||      
  acacguuauua acc ucacau    aaucaa cgac     a
--           u   u      ---a      -    cuuau

Annotation confidence Not enough data

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Genome context

KE953060.1: 284974-285057 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from pbv-mir-449d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-449d-5p

Accession	MIMAT0039055
Description	Python bivittatus pbv-miR-449d-5p mature miRNA
Sequence	15 - UGGCAGUGUACUUCUUAGUUAG - 36
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196