miRBase entry: pbv-mir-454

Stem-loop pbv-mir-454

Accession

MI0030314

Description

Python bivittatus pbv-mir-454 precursor miRNA

Sequence

aggauaaaacccuaucaauauugccucugcuucuucacucggucuuagUAGUGCAAUAUUGCUAAUAGggucuuuucuuu
.(((.((.((((((((((((((((..(((((...((....))....))))).)))))))))...))))))).)).)))..

Structure

-a   u  a       ---         cu     -ucu  a 
  gga aa acccuau   caauauugc  cugcu    uc c
  ||| || |||||||   |||||||||  |||||    ||  
  ucu uu uggGAUA   GUUAUAACG  GAUga    gg u
uu   u  c       AUC         -U     uucu  c

Annotation confidence Not enough data

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Genome context

KE953167.1: 505144-505223 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-454

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-454-3p

Accession	MIMAT0039056
Description	Python bivittatus pbv-miR-454-3p mature miRNA
Sequence	49 - UAGUGCAAUAUUGCUAAUAG - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196