miRBase entry: pbv-mir-1388

Stem-loop pbv-mir-1388


Accession
MI0030328
Description
Python bivittatus pbv-mir-1388 precursor miRNA


Sequence

aagcugaggaguguuucaAGGACUGUCUAACCUGAGAAUGgugaaacaaaaugcucAAUCUCAGGUCCGUCAGCCCAUGagacguuccuucu
.....(((((((((((((.((.(((.(..((((((((.(((((........))).)).))))))))..).))).)).)))))))))))))..

Structure
aagcu             A  A   U UA        A  -   aaa 
     gaggaguguuuca GG CUG C  ACCUGAGA UG gug   c
     ||||||||||||| || ||| |  |||||||| || |||    
     uuccuugcagaGU CC GAC G  UGGACUCU Ac cgu   a
---uc             A  C   U CC        A  u   aaa 


Annotation confidence Not enough data
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Genome context
KE954591.1: 217173-217264 [-]

Database links

Mature pbv-miR-1388-5p

Accession MIMAT0039077
Description Python bivittatus pbv-miR-1388-5p mature miRNA
Sequence 19 - AGGACUGUCUAACCUGAGAAUG - 40
Evidence experimental
Illumina [1]

Mature pbv-miR-1388-3p

Accession MIMAT0039078
Description Python bivittatus pbv-miR-1388-3p mature miRNA
Sequence 57 - AAUCUCAGGUCCGUCAGCCCAUG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196