miRBase entry: bra-MIR156a

Stem-loop bra-MIR156a


Accession
MI0030547
Description
Brassica rapa bra-MIR156a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
16 open access papers mention bra-MIR156a
(167 sentences)

Sequence

aagguaaggggaggUGACAGAAGAGAGUGAGCACacaugguggcuuucuugcaugcuuuuuucaauuaggguuucaugcuugaagcuauguguGCUUACUCUCUCUCUGUCACCccuucucucucucu
..((..(((((.(((((((((((((((((((((((((((((....(((..(((((((((........))))...)))))..))))))))))))))))))))))).))))))))).)))))..))....

Structure
--aa  ua     a         -                    ggcu   uu     ---    uuu 
    gg  agggg ggUGACAGA AGAGAGUGAGCACacauggu    uuc  gcaug   cuuu   c
    ||  ||||| ||||||||| ||||||||||||||||||||    |||  |||||   ||||    
    uc  ucuuc CCACUGUCU UCUCUCAUUCGuguguaucg    aag  cguac   ggga   a
ucuc  uc     c         C                    ----   uu     uuu    uua 


Annotation confidence Not enough data
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Genome context
chrA2: 2983764-2983891 [+]

Database links

Mature bra-miR156a-5p

Accession MIMAT0035816
Description Brassica rapa bra-miR156a-5p mature miRNA
Sequence 15 - UGACAGAAGAGAGUGAGCAC - 34
Evidence experimental
Illumina [1]

Mature bra-miR156a-3p

Accession MIMAT0035817
Description Brassica rapa bra-miR156a-3p mature miRNA
Sequence 94 - GCUUACUCUCUCUCUGUCACC - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146