Stem-loop bra-MIR156d

Accession

MI0030550

Description

Brassica rapa bra-MIR156d precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

16 open access papers mention bra-MIR156d
(148 sentences)

Sequence

uggUGACAGAAGAGAGUGAGCACacaugguggcuuucuugcauauuggaagaucucaugcuugaagcuauguguGCUCACUCUCUAUCUGUCACCcc
.(((((((((((((((((((((((((((((....(((..((((...(((...))).))))..))))))))))))))))))))))).)))))))))..

Structure

-u         -                    ggcu   uu    auu   a 
  ggUGACAGA AGAGAGUGAGCACacauggu    uuc  gcau   gga  
  ||||||||| ||||||||||||||||||||    |||  ||||   ||| g
  CCACUGUCU UCUCUCACUCGuguguaucg    aag  cgua   ucu  
cc         A                    ----   uu    --c   a 

Annotation confidence Not enough data

Genome context

chrA6: 17880586-17880682 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bra-MIR156d

Mature bra-miR156d-5p

• Accession: MIMAT0035822
• Description: Brassica rapa bra-miR156d-5p mature miRNA
• Sequence: 4 - UGACAGAAGAGAGUGAGCAC - 23
• Evidence: experimental ; Illumina [1]

Mature bra-miR156d-3p

• Accession: MIMAT0035823
• Description: Brassica rapa bra-miR156d-3p mature miRNA
• Sequence: 75 - GCUCACUCUCUAUCUGUCACC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146