Stem-loop bra-MIR156f

Accession

MI0030552

Description

Brassica rapa bra-MIR156f precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

16 open access papers mention bra-MIR156f
(149 sentences)

Sequence

uugugagugaaugagcuggggcaaaagaaacacacagaaacUGACAGAAGAGAGUGAGCACacaaaaguaaauugcauauguugcauuugcuucucuugcgUGCUCACUGCUCUUUCUGUCAGAuucccgugcugaucucuuuggccuguccuuguuccucuuugucucagucucuc
....(((.(((((((...((((.(((((..(((((.(((.(((((((((((((((((((((.(((((((((((.(((.....)))))))))))...))).))))))))).))).))))))))).)))..))).))...))))).))))...))))))))))................

Structure

------------uugu   u       cug    a     -aa  -   -a   a         -   -         a   ---        u   u 
                gag gaaugag   gggc aaaga   ca cac  gaa cUGACAGAA GAG AGUGAGCAC caa   aaguaaau gca a
                ||| |||||||   |||| |||||   || |||  ||| ||||||||| ||| ||||||||| |||   |||||||| ||| u
                cuc cuuguuc   uccg uuucu   gu gug  cuu GACUGUCUU CUC UCACUCGUg guu   uucguuua cgu g
cucucugacucuguuu   -       cug    g     cua  c   cc   A         U   G         c   cuc        -   u 

Annotation confidence Not enough data

Genome context

chrA9: 31078747-31078923 [+]

Mature bra-miR156f-5p

• Accession: MIMAT0035826
• Description: Brassica rapa bra-miR156f-5p mature miRNA
• Sequence: 42 - UGACAGAAGAGAGUGAGCAC - 61
• Evidence: experimental ; Illumina [1]

Mature bra-miR156f-3p

• Accession: MIMAT0035827
• Description: Brassica rapa bra-miR156f-3p mature miRNA
• Sequence: 102 - UGCUCACUGCUCUUUCUGUCAGA - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146