miRBase entry: bra-MIR162

Stem-loop bra-MIR162


Accession
MI0030554
Description
Brassica rapa bra-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
6 open access papers mention bra-MIR162
(6 sentences)

Sequence

ugaaaguugaagucgcuGGAGGCAGCGGUUCAUCGAUCaauuccugugaaaaaugauguuggaaacaauuuacaugggaagcaugaaucgaUCGAUAAACCUCUGCAUCCAGugcuucuccuuccu
...(((..((((.(((((((.((((.((((.(((((((.((((.(((.....((((.((((....)))).).))).....))).)))).))))))).)))).)))).)))))))))))..)))...

Structure
uga   uu    u       G    C    C       a    c   gaaaa   - u    g 
   aag  gaag cgcuGGA GCAG GGUU AUCGAUC auuc ugu     aug a guug a
   |||  |||| ||||||| |||| |||| ||||||| |||| |||     ||| | ||||  
   uuc  cuuc guGACCU CGUC CCAA UAGCUag uaag acg     uac u uaac a
ucc   cu    -       A    U    A       c    u   aaggg   a u    a 


Annotation confidence Not enough data
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Genome context
chrA3: 21022093-21022218 [+]

Database links

Mature bra-miR162-5p

Accession MIMAT0035830
Description Brassica rapa bra-miR162-5p mature miRNA
Sequence 18 - GGAGGCAGCGGUUCAUCGAUC - 38
Evidence experimental
Illumina [1]

Mature bra-miR162-3p

Accession MIMAT0035831
Description Brassica rapa bra-miR162-3p mature miRNA
Sequence 92 - UCGAUAAACCUCUGCAUCCAG - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146