Stem-loop bra-MIR168b

Accession

MI0030555

Description

Brassica rapa bra-MIR168b precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

8 open access papers mention bra-MIR168b
(44 sentences)

Sequence

cgggcucggauUCGCUUGGUGCAGGUCGGGACuaauucgcugacacagccacguggauuuuccuuauugguuugugagcagggauuggauCCCGCCUUGCAUCAACUGAAUcggagccucgauggug
(((((((.((((((.((((((((((.(((((((((((((((.(((.(((((...(((...)))....)))))))).)))..))))))).))))).)))))))))).)))))).))))).))......

Structure

------  -     g      C          U     -       --   g   c     -cgu   u 
      cg ggcuc gauUCG UUGGUGCAGG CGGGA Cuaauuc  gcu aca agcca    gga  
      || ||||| |||||| |||||||||| ||||| |||||||  ||| ||| |||||    ||| u
      gc ccgag cUAAGU AACUACGUUC GCCCu gguuagg  cga ugu uuggu    ccu  
guggua  u     g      C          C     a       ga   g   -     uauu   u 

Annotation confidence Not enough data

Genome context

chrA1: 5387909-5388035 [+]

Mature bra-miR168b-5p

• Accession: MIMAT0035832
• Description: Brassica rapa bra-miR168b-5p mature miRNA
• Sequence: 12 - UCGCUUGGUGCAGGUCGGGAC - 32
• Evidence: experimental ; Illumina [1]

Mature bra-miR168b-3p

• Accession: MIMAT0035833
• Description: Brassica rapa bra-miR168b-3p mature miRNA
• Sequence: 91 - CCCGCCUUGCAUCAACUGAAU - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146