miRBase entry: bra-MIR319

Stem-loop bra-MIR319


Accession
MI0030558
Description
Brassica rapa bra-MIR319 precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
9 open access papers mention bra-MIR319
(31 sentences)

Sequence

uuguagggauauauaucgagggAGAGCUUCCUUGAGUCCAUUCagaggcugugauaugauccaauuaguuuccgacucauccauccaaauaccgaguuacuaaauuuuaagauagacucguuaaaugaaugaaugaugcgguagacaaauuggaacauugauucucuuuggUUGGACUGAAGGGAGCUCCCUcucucuu
.................(((((.((((((((((.((((((.(((((((..((.(.(((.(((((((.(((((((..((((.(((.((..((.((((((.((........))...)))))).))..)).))).))))..))).)))).))))))).)))).))..))))))).)))))).)))))))))).)))))....

Structure
uuguagggauauauauc     A          G      U       cu  g u   a       a    -   ac    c   c  aa  c      --a  aaa 
                 gaggg GAGCUUCCUU AGUCCA UCagagg  gu a aug uccaauu guuu ccg  ucau cau ca  ua cgaguu   cu   u
                 ||||| |||||||||| |||||| |||||||  || | ||| ||||||| |||| |||  |||| ||| ||  || ||||||   ||    
                 cucUC CUCGAGGGAA UCAGGU gguuucu  ua u uac agguuaa caga ggc  agua gua gu  au gcucag   ga   u
-------------uucu     C          G      U       cu  g -   a       a    u   gu    a   a  aa  u      aua  auu 


Annotation confidence Not enough data
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Genome context
chrA1: 7428122-7428320 [+]

Database links

Mature bra-miR319-5p

Accession MIMAT0035838
Description Brassica rapa bra-miR319-5p mature miRNA
Sequence 23 - AGAGCUUCCUUGAGUCCAUUC - 43
Evidence experimental
Illumina [1]

Mature bra-miR319-3p

Accession MIMAT0035839
Description Brassica rapa bra-miR319-3p mature miRNA
Sequence 172 - UUGGACUGAAGGGAGCUCCCU - 192
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146