Stem-loop bra-MIR395d

Accession

MI0030561

Description

Brassica rapa bra-MIR395d precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention bra-MIR395d
(14 sentences)

Sequence

gucggauguuuccuagaGUUCCUCUGAGCACUUCAUUGgauauaacauuuucuaucaaaaagaaauguauucuaCUGAAGUGUUUGGGGGAACUCcuggacucauucg
..((((((..(((..((((((((((((((((((((.((((....((((((.((.......))))))))..)))).))))))))))))))))))))..)))..))))))

Structure

gu      uu   ua                    U    uaua      u  au 
  cggaug  ucc  gaGUUCCUCUGAGCACUUCA UGga    acauuu cu  c
  ||||||  |||  |||||||||||||||||||| ||||    |||||| ||  a
  gcuuac  agg  CUCAAGGGGGUUUGUGAAGU aucu    uguaaa ga  a
--      uc   uc                    C    --ua      -  aa 

Annotation confidence Not enough data

Genome context

chrA2: 11572546-11572653 [-]

Mature bra-miR395d-5p

• Accession: MIMAT0035844
• Description: Brassica rapa bra-miR395d-5p mature miRNA
• Sequence: 18 - GUUCCUCUGAGCACUUCAUUG - 38
• Evidence: experimental ; Illumina [1]

Mature bra-miR395d-3p

• Accession: MIMAT0035845
• Description: Brassica rapa bra-miR395d-3p mature miRNA
• Sequence: 75 - CUGAAGUGUUUGGGGGAACUC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146