miRBase entry: bra-MIR395c

Stem-loop bra-MIR395c


Accession
MI0030563
Description
Brassica rapa bra-MIR395c precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention bra-MIR395c
(14 sentences)

Sequence

gucggauguuuccuagaGUUCCUCUGAGCACUUCAUUGgauauaacauuuuuucuaucaaaauuaaauguauuccaCUGAAGUGUUUGGGGGAACUCcuggacucauucg
..((((((..(((..((((((((((((((((((((.((((....((((((..............))))))..)))).))))))))))))))))))))..)))..))))))

Structure
gu      uu   ua                    U    uaua      uuucua 
  cggaug  ucc  gaGUUCCUCUGAGCACUUCA UGga    acauuu      u
  ||||||  |||  |||||||||||||||||||| ||||    ||||||       
  gcuuac  agg  CUCAAGGGGGUUUGUGAAGU accu    uguaaa      c
--      uc   uc                    C    --ua      uuaaaa 


Annotation confidence Not enough data
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Genome context
chrA7: 18568920-18569029 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bra-MIR395c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bra-miR395c-5p

Accession MIMAT0035848
Description Brassica rapa bra-miR395c-5p mature miRNA
Sequence 18 - GUUCCUCUGAGCACUUCAUUG - 38
Evidence experimental
Illumina [1]

Mature bra-miR395c-3p

Accession MIMAT0035849
Description Brassica rapa bra-miR395c-3p mature miRNA
Sequence 77 - CUGAAGUGUUUGGGGGAACUC - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146