miRBase entry: bra-MIR395a

Stem-loop bra-MIR395a


Accession
MI0030564
Description
Brassica rapa bra-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention bra-MIR395a
(16 sentences)

Sequence

augucuccuagaGUUCCUCUGAGCACUUCAUUGgguauacaauuucuuaugaagauuacccaCUGAAGUGUUUGGGGGAACUCcuggacccau
(((..(((..((((((((((((((((((((.((((((.....((((....))))..)))))).))))))))))))))))))))..)))..)))

Structure
   uc   ua                    U      uacaa    u 
aug  ucc  gaGUUCCUCUGAGCACUUCA UGggua     uuuc u
|||  |||  |||||||||||||||||||| ||||||     ||||  
uac  agg  CUCAAGGGGGUUUGUGAAGU acccau     gaag a
   cc   uc                    C      ---ua    u 


Annotation confidence Not enough data
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Genome context
chrA8: 17814983-17815075 [-]

Database links

Mature bra-miR395a-5p

Accession MIMAT0035850
Description Brassica rapa bra-miR395a-5p mature miRNA
Sequence 13 - GUUCCUCUGAGCACUUCAUUG - 33
Evidence experimental
Illumina [1]

Mature bra-miR395a-3p

Accession MIMAT0035851
Description Brassica rapa bra-miR395a-3p mature miRNA
Sequence 63 - CUGAAGUGUUUGGGGGAACUC - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146