Stem-loop bra-MIR398

Accession

MI0030566

Description

Brassica rapa bra-MIR398 precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

5 open access papers mention bra-MIR398
(10 sentences)

Sequence

guggaccucgacaGGGUCGACAUGAGAACACAUGguaaucaaagacuguaaugacgccacgucauuguaacauacaucacucuuuucaUGUGUUCUCAGGUCACCCCUGcugagcucuuucucu
..(((.((((.(((((..(((.(((((((((((((.....(((((.((((((((((...))))))))..........)).)))))))))))))))))).)))..))))).)))).)))......

Structure

----gu   c    a     UC   A             uaauc     c  ----------        c 
      gga cucg caGGG  GAC UGAGAACACAUGg     aaaga ug          uaaugacg  
      ||| |||| |||||  ||| |||||||||||||     ||||| ||          |||||||| c
      ucu gagu GUCCC  CUG ACUCUUGUGUacu     uuucu ac          guuacugc  
ucucuu   c    c     CA   G             -----     c  uacauacaau        a 

Annotation confidence Not enough data

Genome context

chrA3: 2736128-2736251 [+]

Mature bra-miR398-5p

• Accession: MIMAT0035854
• Description: Brassica rapa bra-miR398-5p mature miRNA
• Sequence: 14 - GGGUCGACAUGAGAACACAUG - 34
• Evidence: experimental ; Illumina [1]

Mature bra-miR398-3p

• Accession: MIMAT0035855
• Description: Brassica rapa bra-miR398-3p mature miRNA
• Sequence: 89 - UGUGUUCUCAGGUCACCCCUG - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146