miRBase entry: bra-MIR400

Stem-loop bra-MIR400


Accession
MI0030567
Description
Brassica rapa bra-MIR400 precursor miRNA

Literature search
3 open access papers mention bra-MIR400
(6 sentences)

Sequence

aucuuuucuugagaaguugcugaagauuguuuUAUGAGAGUAUUAUAAGUCACugcauuugguaaucaaguguugcuuucccaaacgaaguGACUUAUAAUGAUCUCAUGAAucgauuuuugcaaagucuuaagagaguaa
...(((((((((((..((((.((((((((.(((((((((.((((((((((((((.(.(((((.....((((...))))..))))).).)))))))))))))).))))))))).))))))))))))..)))))))))))...

Structure
auc           ag    u        u         G              g a     uaauc    g 
   uuuucuugaga  uugc gaagauug uuUAUGAGA UAUUAUAAGUCACu c uuugg     aagu  
   |||||||||||  |||| |||||||| ||||||||| |||||||||||||| | |||||     |||| u
   gagagaauucu  aacg uuuuuagc AAGUACUCU GUAAUAUUCAGuga g aaacc     uucg  
aau           ga    -        u         A              a c     ---cu    u 


Annotation confidence Not enough data
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Genome context
chrA9: 20034113-20034253 [-]

Database links

Mature bra-miR400-5p

Accession MIMAT0035856
Description Brassica rapa bra-miR400-5p mature miRNA
Sequence 33 - UAUGAGAGUAUUAUAAGUCAC - 53
Evidence experimental
Illumina [1]

Mature bra-miR400-3p

Accession MIMAT0035857
Description Brassica rapa bra-miR400-3p mature miRNA
Sequence 92 - GACUUAUAAUGAUCUCAUGAA - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146