Stem-loop bra-MIR164b

Accession

MI0030571

Description

Brassica rapa bra-MIR164b precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

10 open access papers mention bra-MIR164b
(24 sentences)

Sequence

gaguuacacuugcUGGAGAAGCAGGGCACGUGCGaacaaaugagaucgaucgguauauguugaucauauuuucgCACGUGUUCUACUACUCCAACacgugugccucccccuc
(((.(((((.((.(((((.((.((((((((((((((..((((.(((((((........))))))).)))))))))))))))))).)).))))).)).))))).)))......

Structure

------   u     u  c     A  C              ca    a       cgg 
      gag uacac ug UGGAG AG AGGGCACGUGCGaa  aaug gaucgau   u
      ||| ||||| || ||||| || ||||||||||||||  |||| |||||||    
      cuc gugug aC ACCUC UC UCUUGUGCACgcuu  uuau cuaguug   a
cucccc   c     c  A     A  A              --    a       uau 

Annotation confidence Not enough data

Genome context

chrA2: 24491315-24491426 [+]

Mature bra-miR164b-5p

• Accession: MIMAT0035864
• Description: Brassica rapa bra-miR164b-5p mature miRNA
• Sequence: 14 - UGGAGAAGCAGGGCACGUGCG - 34
• Evidence: experimental ; Illumina [1]

Mature bra-miR164b-3p

• Accession: MIMAT0035865
• Description: Brassica rapa bra-miR164b-3p mature miRNA
• Sequence: 75 - CACGUGUUCUACUACUCCAAC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146