miRBase entry: bra-MIR172c

Stem-loop bra-MIR172c


Accession
MI0030575
Description
Brassica rapa bra-MIR172c precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
14 open access papers mention bra-MIR172c
(52 sentences)

Sequence

uucagacuuugaagcaguugcagucauuuuuugcuauuGCAUCAUCAUCAAGAUUCAGAaaucauauuccuugauggguucuccuucgagccugucuuuuuugguuugAGAAUCUUGAUGAUGCUGCAGcggcgauuaaauggcuuuuuuau
((((.....))))((....))((((((((.(((((.(((((.((((((((((((((..((((((........(((((((((......))))))))).....))))))..)))))))))))))).))))).)))))..)))))))).......

Structure
uucagacuuugaagcaguugc        -u     a     U              AG      uauuccuu         uc 
                     agucauuu  uugcu uuGCA CAUCAUCAAGAUUC  Aaauca        gauggguuc  c
                     ||||||||  ||||| ||||| ||||||||||||||  ||||||        |||||||||   
                     ucgguaaa  agcgg GACGU GUAGUAGUUCUAAG  uuuggu        cuguccgag  u
--------------uauuuuu        uu     c     C              Ag      ---uuuuu         cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrA9: 27738162-27738313 [+]

Database links

Mature bra-miR172c-5p

Accession MIMAT0035872
Description Brassica rapa bra-miR172c-5p mature miRNA
Sequence 39 - GCAUCAUCAUCAAGAUUCAGA - 59
Evidence experimental
Illumina [1]

Mature bra-miR172c-3p

Accession MIMAT0035873
Description Brassica rapa bra-miR172c-3p mature miRNA
Sequence 109 - AGAAUCUUGAUGAUGCUGCAG - 129
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146