Stem-loop bra-MIR2111

Accession

MI0030576

Description

Brassica rapa bra-MIR2111 precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

4 open access papers mention bra-MIR2111
(6 sentences)

Sequence

uauuggugaggaccgggUAAUCUGCAUCCUGGGGUUUAagguuuaaguacacgcaaaaauaugcguacgcauauauuuguguguguuaguauagcuuuuaGACCUCAGGAUGCGGAUUACCucuuccuuacaauacg
(((((.((((((..((((((((((((((((((((((((((((((((.((((((((((.((((((....)))))).)))))))))))))....))).))))))))))))))))))))))))))..)))))))))))..

Structure

--     g      cc                          -   ----   g          a      g 
  uauug ugagga  gggUAAUCUGCAUCCUGGGGUUUAag guu    uaa uacacgcaaa auaugc u
  ||||| ||||||  |||||||||||||||||||||||||| |||    ||| |||||||||| ||||||  
  auaac auuccu  uCCAUUAGGCGUAGGACUCCAGauuu cga    auu guguguguuu uauacg a
gc     -      uc                          u   uaug   -          a      c 

Annotation confidence Not enough data

Genome context

chrA1: 27648068-27648204 [-]

Mature bra-miR2111-5p

• Accession: MIMAT0035874
• Description: Brassica rapa bra-miR2111-5p mature miRNA
• Sequence: 18 - UAAUCUGCAUCCUGGGGUUUA - 38
• Evidence: experimental ; Illumina [1]

Mature bra-miR2111-3p

• Accession: MIMAT0035875
• Description: Brassica rapa bra-miR2111-3p mature miRNA
• Sequence: 101 - GACCUCAGGAUGCGGAUUACC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146