miRBase entry: chi-let-7b

Stem-loop chi-let-7b


Accession
MI0030580
Description
Capra hircus chi-let-7b precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
15 open access papers mention chi-let-7b
(58 sentences)

Sequence

ggcggggUGAGGUAGUAGGUUGUGUGGUUucaggguagugauguugcccccucggaagauaaCUAUACAACCUACUGCCUUCCUugaggggcccagu
(((((((.(((((((((((((((((((((((.((((((.....))))))(....)..)).))))))))))))))))))))))))).....)))....

Structure
----   -----    U                     -  -------a      u 
    ggc     gggg GAGGUAGUAGGUUGUGUGGUU uc        ggguag g
    |||     |||| ||||||||||||||||||||| ||        |||||| a
    ccg     uUCC UUCCGUCAUCCAACAUAUCaa ag        cccguu u
ugac   gggag    -                     u  aaggcucc      g 


Annotation confidence Not enough data
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Genome context
chr5: 118522775-118522871 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-let-7b-5p

Accession MIMAT0035882
Description Capra hircus chi-let-7b-5p mature miRNA
Sequence 8 - UGAGGUAGUAGGUUGUGUGGUU - 29
Evidence experimental
Illumina [1]

Mature chi-let-7b-3p

Accession MIMAT0035883
Description Capra hircus chi-let-7b-3p mature miRNA
Sequence 63 - CUAUACAACCUACUGCCUUCCU - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40