miRBase entry: chi-mir-1

Stem-loop chi-mir-1


Accession
MI0030587
Description
Capra hircus chi-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
9 open access papers mention chi-mir-1
(48 sentences)

Sequence

uaccugcuugggaaacauacuucuuuaugugcccauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUuucaggucgggaacucuc
..(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).))))))).)))).......

Structure
-----ua    -       a                gc     ---   a 
       ccug cuuggga acauacuucuuuaugu  ccaua   ugg c
       |||| ||||||| ||||||||||||||||  |||||   ||| c
       gggc ggacuuU UGUAUGAAGAAAUGUA  GGUau   auc u
cucucaa    u       A                -A     cga   g 


Annotation confidence Not enough data
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Genome context
chr13: 55656779-55656871 [-]

Database links

Mature chi-miR-1

Accession MIMAT0035896
Description Capra hircus chi-miR-1 mature miRNA
Sequence 54 - UGGAAUGUAAAGAAGUAUGUAU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40