miRBase entry: chi-mir-106a

Stem-loop chi-mir-106a


Accession
MI0030593
Description
Capra hircus chi-mir-106a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

ccuuggccauguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucUACUGCAAUGCAAGCACUUCUUacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure
  u   cc      -        A  G     G   C   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacaUU UUCACGAA GU ACGUC AUc aga  
  u   au      C        C  A     -   u   g 


Annotation confidence Not enough data
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Genome context
chrX: 40075491-40075571 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from chi-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-106a-5p

Accession MIMAT0035906
Description Capra hircus chi-miR-106a-5p mature miRNA
Sequence 13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
Evidence experimental
Illumina [1]

Mature chi-miR-106a-3p

Accession MIMAT0035907
Description Capra hircus chi-miR-106a-3p mature miRNA
Sequence 48 - UACUGCAAUGCAAGCACUUCUU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40