Stem-loop chi-mir-106b

Accession

MI0030594

Description

Capra hircus chi-mir-106b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccugugugcuaCCGCACUGUGGGUACUUGCUgcuccagcagg
(((((.(((((..(((((((.(((((((.(.(((((........)))))).))))))).)))))))...))))).)))))

Structure

     c     -UA       G       A A     guc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagug   c
||||| |||||   ||||||| ||||||| | |||||    
ggacg ccucg   UUCAUGG UGUCACG C aucgu   u
     a     UCG       G       C -     gug 

Annotation confidence Not enough data

Genome context

chr25: 38750004-38750083 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-106b

Mature chi-miR-106b-5p

• Accession: MIMAT0035908
• Description: Capra hircus chi-miR-106b-5p mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAU - 32
• Evidence: experimental ; Illumina [1]

Mature chi-miR-106b-3p

• Accession: MIMAT0035909
• Description: Capra hircus chi-miR-106b-3p mature miRNA
• Sequence: 50 - CCGCACUGUGGGUACUUGCU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40