miRBase entry: chi-mir-1197

Stem-loop chi-mir-1197


Accession
MI0030599
Description
Capra hircus chi-mir-1197 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

gaggcgaggucggcaucccuuccugguauuugaagacgcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgccuuggaagaccuucc
(((((((((..(...........(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))))..)))))))))((((....))))

Structure
------------         uc gcaucccuucc       -u     cgc   u       g   -g    - uuu 
            gaggcgagg  g           ugguauu  gaaga   ggu gaccaug ugu  uacg c   a
            |||||||||  |           |||||||  |||||   ||| ||||||| |||  |||| |   u
            uuccgcuuc  c           acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccuuccagaagg         ua -----------       cu     ---   U       -   GG    a uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr21: 67103896-67104024 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from chi-mir-1197
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-1197-3p

Accession MIMAT0035917
Description Capra hircus chi-miR-1197-3p mature miRNA
Sequence 74 - UAGGACACAUGGUCUACUUCU - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40