miRBase entry: chi-mir-127

Stem-loop chi-mir-127


Accession
MI0030608
Description
Capra hircus chi-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127

Literature search
5 open access papers mention chi-mir-127
(19 sentences)

Sequence

cucgcuuugaucacugucuccagccugcuGAAGCUCAGAGGGCUCUGAUUCagaaagaucaUCGGAUCCGUCUGAGCUUGGcuggucggaagucuccucaucugcuuccuucggguu
((((....(((....))).((((((.....(((((((((.((.((((((((.....))..)))))).)).)))))))))))))))..((((((..........))))))..))))..

Structure
--    -----------cuuugaucacugucu      ugcuG         G  C      --  a 
  cucg                          ccagcc     AAGCUCAGA GG UCUGAU  UC g
  ||||                          ||||||     ||||||||| || ||||||  || a
  gggc                          ggucGG     UUCGAGUCU CC AGGCUa  ag a
uu    uuccuucgucuacuccucugaaggcu      -----         G  U      cu  a 


Annotation confidence Not enough data
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Genome context
chr21: 66965394-66965510 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from chi-mir-127
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-127-5p

Accession MIMAT0035929
Description Capra hircus chi-miR-127-5p mature miRNA
Sequence 30 - GAAGCUCAGAGGGCUCUGAUUC - 51
Evidence experimental
Illumina [1]

Mature chi-miR-127-3p

Accession MIMAT0035930
Description Capra hircus chi-miR-127-3p mature miRNA
Sequence 62 - UCGGAUCCGUCUGAGCUUGG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40