Stem-loop chi-mir-130a

Accession

MI0030616

Description

Capra hircus chi-mir-130a precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

5 open access papers mention chi-mir-130a
(5 sentences)

Sequence

ugcugcgggccggaGCUCUUUUCACAUUGUGCUACUgucugcgccugucacuagCAGUGCAAUGUUAAAAGGGCAuuggccgcgcagcg
.((((((((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).)))))).)))))).

Structure

u      -      a        C          A   ucu  g 
 gcugcg ggccgg GCUCUUUU ACAUUGUGCU CUg   gc c
 |||||| |||||| |||||||| |||||||||| |||   ||  
 cgacgc ccgguu CGGGAAAA UGUAACGUGA gau   ug c
g      g      A        U          C   cac  u 

Annotation confidence Not enough data

Genome context

chr15: 82844823-82844911 [+]

Mature chi-miR-130a-5p

• Accession: MIMAT0035943
• Description: Capra hircus chi-miR-130a-5p mature miRNA
• Sequence: 15 - GCUCUUUUCACAUUGUGCUACU - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-130a-3p

• Accession: MIMAT0035944
• Description: Capra hircus chi-miR-130a-3p mature miRNA
• Sequence: 55 - CAGUGCAAUGUUAAAAGGGCA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40