miRBase entry: chi-mir-136

Stem-loop chi-mir-136


Accession
MI0030624
Description
Capra hircus chi-mir-136 precursor miRNA
Gene family
MIPF0000099; mir-136

Literature search
2 open access papers mention chi-mir-136
(4 sentences)

Sequence

ucggaugagcccucggaggACUCCAUUUGUUUUGAUGAUGGauucuuacgcuccAUCAUCGUCUCAAAUGAGUCUucagaggguucuaucau
...(((((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))..

Structure
ucg   -        g        C     UUU          uuc 
   gau gagcccuc gaggACUC AUUUG   UGAUGAUGGa   u
   ||| |||||||| |||||||| |||||   ||||||||||   u
   cua cuugggag cuUCUGAG UAAAC   GCUACUAccu   a
-ua   u        a        -     UCU          cgc 


Annotation confidence Not enough data
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Genome context
chr21: 66967078-66967169 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from chi-mir-136
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-136-5p

Accession MIMAT0035955
Description Capra hircus chi-miR-136-5p mature miRNA
Sequence 20 - ACUCCAUUUGUUUUGAUGAUGG - 41
Evidence experimental
Illumina [1]

Mature chi-miR-136-3p

Accession MIMAT0035956
Description Capra hircus chi-miR-136-3p mature miRNA
Sequence 55 - AUCAUCGUCUCAAAUGAGUCU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40